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pdm2 POU domain protein 2 [ Drosophila virilis ]

Gene ID: 6635747, updated on 24-May-2024

Summary

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Gene symbol
pdm2
Gene description
POU domain protein 2
Locus tag
Dvir_GJ16274
See related
EnsemblRapid:LOC6635747
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
pdm-2; GJ16274; pdm2-PB; pdm2-PC; pdm2-PD; pdm2-PE; pdm2-PF; Dvir\pdm2; GJ16274-PB; GJ16274-PC; GJ16274-PD; GJ16274-PE; GJ16274-PF
Orthologs
fruit fly all
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Genomic context

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See pdm2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587573.1 (266353..312040, complement)

NW_022587573.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116651802 Neighboring gene chaperonin containing TCP1 subunit 4 Neighboring gene endothelin-converting enzyme-like 1 Neighboring gene protein nubbin Neighboring gene uncharacterized LOC116651780

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587573 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conservation of complex expression domains of the pdm-2 POU domain gene between Drosophila virilis and Drosophila melanogaster. Poole SJ. Mech Dev, 1995 Jan. PMID 7748782
  2. Forum domain in Drosophila melanogaster cut locus possesses looped domains inside. Tchurikov NA, et al. Nucleic Acids Res, 1998 Jul 1. PMID 9628922, Free PMC Article
  3. Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences. Bergman CM, et al. Genome Res, 2001 Aug. PMID 11483574
  4. Substitution rates in Drosophila nuclear genes: implications for translational selection. Dunn KA, et al. Genetics, 2001 Jan. PMID 11139510, Free PMC Article
  5. Codon usage bias and tRNA abundance in Drosophila. Moriyama EN, et al. J Mol Evol, 1997 Nov. PMID 9342399

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
POU domain protein 2
Names
Dvir\GJ16274
Dvir\GJ16274-PB
Dvir\GJ16274-PC
Dvir\GJ16274-PD
Dvir\GJ16274-PE
Dvir\GJ16274-PF
Dvir\pdm2-PB
Dvir\pdm2-PC
Dvir\pdm2-PD
Dvir\pdm2-PE
Dvir\pdm2-PF
dvir_GLEANR_16714

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587573.1 Reference DvirRS2

    Range
    266353..312040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002059182.3 → XP_002059218.3  POU domain protein 2 isoform X1

    UniProtKB/TrEMBL
    B4MDL5
    Related
    XP_002059218.3, XM_002059182.3
    Conserved Domains (2) summary
    smart00352
    Location:303 → 367
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:401 → 455
    Homeobox; Homeobox domain

  2. XM_015169032.2 → XP_015024518.2  POU domain protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A0Q9WYR1
    Related
    XP_015024518.2, XM_015169032.2
    Conserved Domains (2) summary
    smart00352
    Location:286 → 350
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:384 → 438
    Homeobox; Homeobox domain

  3. XM_015169030.2 → XP_015024516.2  POU domain protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A0Q9WLP8
    Related
    XP_015024516.2, XM_015169030.2
    Conserved Domains (2) summary
    smart00352
    Location:231 → 295
    POU; Found in Pit-Oct-Unc transcription factors
    pfam00046
    Location:329 → 383
    Homeobox; Homeobox domain
Nucleotide Protein Strain
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