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LOC6634680 probable ATP-dependent RNA helicase DHX34 [ Drosophila virilis ]

Gene ID: 6634680, updated on 10-May-2024

Summary

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Gene symbol
LOC6634680
Gene description
probable ATP-dependent RNA helicase DHX34
Locus tag
Dvir_GJ15737
See related
EnsemblRapid:LOC6634680
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ15737; GJ15737-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6634680 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587403.1 (3650094..3654644)

NW_022587403.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 16, NatA auxiliary subunit Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene 5'-3' exoribonuclease 1 Neighboring gene protein SWAP Neighboring gene NADH:ubiquinone oxidoreductase subunit 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587403 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DHX34
Names
Dvir\GJ15737
Dvir\GJ15737-PA
dvir_GLEANR_16179

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587403.1 Reference DvirRS2

    Range
    3650094..3654644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002057960.3 → XP_002057996.1  probable ATP-dependent RNA helicase DHX34

    See identical proteins and their annotated locations for XP_002057996.1

    UniProtKB/TrEMBL
    B4MA45
    Related
    XP_002057996.1, XM_002057960.3
    Conserved Domains (5) summary
    smart00487
    Location:131 → 326
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:562 → 642
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:162 → 297
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:360 → 492
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:793 → 896
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
Nucleotide Protein Strain
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