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Hcs holocarboxylase synthetase-like protein [ Drosophila virilis ]

Gene ID: 6631048, updated on 23-May-2024

Summary

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Gene symbol
Hcs
Gene description
holocarboxylase synthetase-like protein
Locus tag
Dvir_GJ22700
See related
EnsemblRapid:LOC6631048
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ22700; GJ22700-PA; GJ22700-PB; GJ22700-PC; GJ22700-PD; GJ22700-PE
Orthologs
fruit fly all
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Genomic context

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See Hcs in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587574.1 (6267430..6278449)

NW_022587574.1Genomic Context describing neighboring genes Neighboring gene DNA polymerase delta interacting protein 2 Neighboring gene mitochondrial ribosomal protein L44 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 Neighboring gene histone deacetylase 3 Neighboring gene kinase suppressor of ras Neighboring gene uncharacterized LOC116651885 Neighboring gene SURP and G-patch domain-containing protein 1 Neighboring gene sodium potassium chloride cotransporter

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587574 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables biotin-[acetyl-CoA-carboxylase] ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein modification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biotin--protein ligase
Names
Dvir\GJ22700
Dvir\GJ22700-PA
Dvir\GJ22700-PB
Dvir\GJ22700-PC
Dvir\GJ22700-PD
Dvir\GJ22700-PE
dvir_GLEANR_8077

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587574.1 Reference DvirRS2

    Range
    6267430..6278449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032439195.1 → XP_032295086.1  biotin--protein ligase isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WG74
    Related
    XP_032295086.1, XM_032439195.1
    Conserved Domains (3) summary
    COG0340
    Location:780 → 1005
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    PRK08691
    Location:282 → 390
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cl00020
    Location:423 → 500
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain

  2. XM_032439194.1 → XP_032295085.1  biotin--protein ligase isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WG74
    Related
    XP_032295085.1, XM_032439194.1
    Conserved Domains (3) summary
    COG0340
    Location:780 → 1005
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    PRK08691
    Location:282 → 390
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cl00020
    Location:423 → 500
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain

  3. XM_015171390.2 → XP_015026876.1  biotin--protein ligase isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WG74
    Related
    XP_015026876.1, XM_015171390.2
    Conserved Domains (3) summary
    COG0340
    Location:780 → 1005
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    PRK08691
    Location:282 → 390
    PRK08691; DNA polymerase III subunits gamma and tau; Validated
    cl00020
    Location:423 → 500
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain

  4. XM_002054597.3 → XP_002054633.1  biotin--protein ligase isoform X2

    See identical proteins and their annotated locations for XP_002054633.1

    UniProtKB/TrEMBL
    B4LZB8
    Related
    XP_002054633.1, XM_002054597.3
    Conserved Domains (5) summary
    COG0340
    Location:774 → 999
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    pfam02237
    Location:950 → 999
    BPL_C; Biotin protein ligase C terminal domain
    pfam11035
    Location:214 → 349
    SnAPC_2_like; Small nuclear RNA activating complex subunit 2, SNAP190 Myb
    cl00020
    Location:423 → 500
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
    cl14057
    Location:755 → 883
    BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family

  5. XM_015171389.2 → XP_015026875.1  biotin--protein ligase isoform X3

    UniProtKB/TrEMBL
    A0A0Q9WH13
    Related
    XP_015026875.1, XM_015171389.2
    Conserved Domains (5) summary
    COG0340
    Location:732 → 957
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    pfam02237
    Location:908 → 957
    BPL_C; Biotin protein ligase C terminal domain
    pfam11035
    Location:166 → 301
    SnAPC_2_like; Small nuclear RNA activating complex subunit 2, SNAP190 Myb
    cl00020
    Location:375 → 452
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
    cl14057
    Location:713 → 841
    BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family

  6. XM_015171388.2 → XP_015026874.1  biotin--protein ligase isoform X4

    UniProtKB/TrEMBL
    A0A0Q9WGL7
    Related
    XP_015026874.1, XM_015171388.2
    Conserved Domains (5) summary
    COG0340
    Location:726 → 951
    BirA2; Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme transport and metabolism]
    pfam02237
    Location:902 → 951
    BPL_C; Biotin protein ligase C terminal domain
    pfam11035
    Location:166 → 301
    SnAPC_2_like; Small nuclear RNA activating complex subunit 2, SNAP190 Myb
    cl00020
    Location:375 → 452
    GAT_1; Type 1 glutamine amidotransferase (GATase1)-like domain
    cl14057
    Location:707 → 835
    BPL_LplA_LipB; Biotin/lipoate A/B protein ligase family
Nucleotide Protein Strain
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