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U4-U6-60K U4-U6 small nuclear riboprotein factor 60K [ Tribolium castaneum (red flour beetle) ]

Gene ID: 663064, updated on 10-May-2024

Summary

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Gene symbol
U4-U6-60K
Gene description
U4-U6 small nuclear riboprotein factor 60K
Locus tag
TcasGA2_TC000271
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (1346620..1349631)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (13719052..13722028, complement)

Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene phenoloxidase-activating factor 2 Neighboring gene uncharacterized LOC107399298 Neighboring gene Component of oligomeric golgi complex 7 Neighboring gene protein SERAC1 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U4 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6 small nuclear ribonucleoprotein Prp4
Names
AUGUSTUS-3.0.2_00271
GLEAN_00271
U4/U6 small nuclear ribonucleoprotein Prp4-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

    Range
    1346620..1349631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_969125.5 → XP_974218.2  U4/U6 small nuclear ribonucleoprotein Prp4

    See identical proteins and their annotated locations for XP_974218.2

    UniProtKB/TrEMBL
    D6WBF5
    Conserved Domains (4) summary
    smart00500
    Location:89 → 128
    SFM; Splicing Factor Motif, present in Prp18 and Pr04
    COG2319
    Location:213 → 505
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:222 → 506
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:220 → 256
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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