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LOC6629162 ATP-dependent DNA/RNA helicase DHX36 [ Drosophila virilis ]

Gene ID: 6629162, updated on 10-May-2024

Summary

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Gene symbol
LOC6629162
Gene description
ATP-dependent DNA/RNA helicase DHX36
Locus tag
Dvir_GJ22099
See related
EnsemblRapid:LOC6629162
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ22099; GJ22099-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6629162 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587572.1 (8067160..8075473, complement)

NW_022587572.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1 member A Neighboring gene uncharacterized LOC116651557 Neighboring gene uncharacterized LOC26530984 Neighboring gene guanine nucleotide-binding protein-like 1 Neighboring gene metal transporter uex Neighboring gene NHL repeat-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587572 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent DNA/RNA helicase DHX36
Names
Dvir\GJ22099
Dvir\GJ22099-PA
dvir_GLEANR_741

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587572.1 Reference DvirRS2

    Range
    8067160..8075473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032438165.1 → XP_032294056.1  ATP-dependent DNA/RNA helicase DHX36 isoform X2

    Related
    XP_032294056.1, XM_032438165.1
    Conserved Domains (1) summary
    COG1643
    Location:104 → 814
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]

  2. XM_002052329.3 → XP_002052365.1  ATP-dependent DNA/RNA helicase DHX36 isoform X1

    See identical proteins and their annotated locations for XP_002052365.1

    UniProtKB/TrEMBL
    B4LQY1
    Related
    XP_002052365.1, XM_002052329.3
    Conserved Domains (6) summary
    smart00847
    Location:601 → 684
    HA2; Helicase associated domain (HA2) Add an annotation
    COG1643
    Location:104 → 814
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    cd00046
    Location:159 → 301
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:398 → 531
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:722 → 840
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    pfam13851
    Location:28 → 161
    GAS; Growth-arrest specific micro-tubule binding
Nucleotide Protein Strain
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