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wfs1 wolframin ER transmembrane glycoprotein wfs1 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 662278, updated on 15-May-2024

Summary

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Gene symbol
wfs1
Gene description
wolframin ER transmembrane glycoprotein wfs1
Primary source
BEETLEBASE:TC012305
Locus tag
TcasGA2_TC012305
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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See wfs1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (14126123..14129158)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (3969265..3972840)

Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene clarin-3 Neighboring gene Biorientation Defective 1 Neighboring gene ABC transporter G family member 20 Neighboring gene Nop56 Neighboring gene clathrin interactor lqfR

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
similar to CG4917-PA, isoform A; wolframin
Names
AUGUSTUS-3.0.2_12305
GLEAN_12305
Wolframin-like Protein
wolfram syndrome 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

    Range
    14126123..14129158
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008199377.3 → XP_008197599.1  wolframin isoform X2

    Conserved Domains (3) summary
    COG0790
    Location:33 → 152
    TPR; TPR repeat [Signal transduction mechanisms]
    cl01503
    Location:248 → 413
    TrbL; TrbL/VirB6 plasmid conjugal transfer protein
    cl09326
    Location:493 → 564
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins

  2. XM_968387.4 → XP_973480.2  wolframin isoform X1

    UniProtKB/TrEMBL
    D6X0P3
    Conserved Domains (2) summary
    cl01503
    Location:250 → 415
    TrbL; TrbL/VirB6 plasmid conjugal transfer protein
    cl09326
    Location:495 → 566
    MATE_like; Multidrug and toxic compound extrusion family and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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