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LOC6622443 tRNA (cytosine(72)-C(5))-methyltransferase NSUN6 [ Drosophila virilis ]

Gene ID: 6622443, updated on 10-May-2024

Summary

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Gene symbol
LOC6622443
Gene description
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6
Locus tag
Dvir_GJ11797
See related
EnsemblRapid:LOC6622443
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ11797; GJ11797-PB
Orthologs
fruit fly all
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Genomic context

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See LOC6622443 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587564.1 (7841225..7843081)

NW_022587564.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6622673 Neighboring gene ER membrane protein complex subunit 4 Neighboring gene ADP-ribosylation factor 1 Neighboring gene putative uncharacterized protein DDB_G0271606 Neighboring gene general transcription factor IIH subunit 2 Ssl1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587564 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: tRNA (cytosine(72)-C(5))-methyltransferase NSUN6
Names
Dvir\GJ11797
Dvir\GJ11797-PB
dvir_GLEANR_11810

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587564.1 Reference DvirRS2

    Range
    7841225..7843081
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002047629.3 → XP_002047665.2  LOW QUALITY PROTEIN: tRNA (cytosine(72)-C(5))-methyltransferase NSUN6

    UniProtKB/TrEMBL
    B4LDP6
    Related
    XP_002047665.2, XM_002047629.3
    Conserved Domains (3) summary
    smart00359
    Location:102 → 193
    PUA; Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
    COG0144
    Location:212 → 439
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:223 → 438
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein Strain
Heading Accession and Version

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