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Dscam4 Down syndrome cell adhesion molecule 4 [ Drosophila virilis ]

Gene ID: 6622385, updated on 15-May-2024

Summary

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Gene symbol
Dscam4
Gene description
Down syndrome cell adhesion molecule 4
Locus tag
Dvir_GJ12521
See related
EnsemblRapid:LOC6622385
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila virilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GJ12521; GJ12521-PA; GJ12521-PB; GJ12521-PC; GJ12521-PD; GJ12521-PE
Orthologs
fruit fly all
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Genomic context

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See Dscam4 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
32
Annotation release Status Assembly Chr Location
103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587564.1 (19947737..20000399)

NW_022587564.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E3 Neighboring gene uncharacterized LOC6624551 Neighboring gene ceramide transfer protein Neighboring gene uncharacterized LOC6622404

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_022587564 Unplaced Scaffold Reference DvirRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite self-avoidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Down syndrome cell adhesion molecule-like protein Dscam2
Names
Dvir\GJ12521
Dvir\GJ12521-PA
Dvir\GJ12521-PB
Dvir\GJ12521-PC
Dvir\GJ12521-PD
Dvir\GJ12521-PE
dvir_GLEANR_12486

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DvirRS2

Genomic

  1. NW_022587564.1 Reference DvirRS2

    Range
    19947737..20000399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015175468.2 → XP_015030954.2  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WUU0
    Related
    XP_015030954.2, XM_015175468.2
    Conserved Domains (7) summary
    cd00063
    Location:906 → 999
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain

  2. XM_032434459.1 → XP_032290350.1  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X3

    UniProtKB/TrEMBL
    B4LCA4
    Related
    XP_032290350.1, XM_032434459.1
    Conserved Domains (7) summary
    cd00063
    Location:1139 → 1232
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain

  3. XM_032434456.1 → XP_032290347.1  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WUU0
    Related
    XP_032290347.1, XM_032434456.1
    Conserved Domains (7) summary
    cd00063
    Location:906 → 999
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain

  4. XM_032434458.1 → XP_032290349.1  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X2

    UniProtKB/TrEMBL
    A0A0Q9WT95
    Related
    XP_032290349.1, XM_032434458.1
    Conserved Domains (7) summary
    cd00063
    Location:906 → 999
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain

  5. XM_032434460.1 → XP_032290351.1  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X4

    UniProtKB/TrEMBL
    A0A0Q9WSH9
    Related
    XP_032290351.1, XM_032434460.1
    Conserved Domains (7) summary
    cd00063
    Location:906 → 999
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain

  6. XM_032434457.1 → XP_032290348.1  Down syndrome cell adhesion molecule-like protein Dscam2 isoform X1

    UniProtKB/TrEMBL
    A0A0Q9WUU0
    Related
    XP_032290348.1, XM_032434457.1
    Conserved Domains (7) summary
    cd00063
    Location:906 → 999
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00096
    Location:611 → 613
    Ig; Ig strand A [structural motif]
    cd20954
    Location:706 → 801
    IgI_7_Dscam; Seventh immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20956
    Location:422 → 516
    IgI_4_Dscam; Fourth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cd20957
    Location:329 → 417
    IgC2_3_Dscam; Third immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the Constant 2 (C2)-set of IgSF domains
    cd20958
    Location:520 → 607
    IgI_5_Dscam; Fifth immunoglobulin domain of the Drosophila melanogaster Dscam protein, and similar domains; a member of the I-set of IgSF domains
    cl11960
    Location:610 → 703
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
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