U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cic Putative transcription factor capicua [ Drosophila sechellia ]

Gene ID: 6619286, updated on 24-May-2024

Summary

Go to the top of the page Help
Gene symbol
cic
Gene description
Putative transcription factor capicua
Locus tag
Dsec_GM23103
See related
EnsemblRapid:LOC6619286
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM23103; GM23104; GM23103-PA; GM23104-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See cic in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3R NC_045952.1 (8322292..8365872, complement)

Chromosome 3R - NC_045952.1Genomic Context describing neighboring genes Neighboring gene odorant receptor 67a Neighboring gene uncharacterized LOC6619285 Neighboring gene neuroligin 4-like Neighboring gene uncharacterized oxidoreductase YjmC Neighboring gene myophilin

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_045952.1 Chromosome 3R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
putative transcription factor capicua
Names
Dsec\GM23103
Dsec\GM23103-PA
Dsec\GM23104
Dsec\GM23104-PA
dsec_GLEANR_5943
dsec_GLEANR_5944

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045952.1 Reference ASM438219v1

    Range
    8322292..8365872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032723111.1 → XP_032579002.1  putative transcription factor capicua isoform X2

    Related
    XP_032579002.1, XM_032723111.1
    Conserved Domains (2) summary
    cd01388
    Location:1226 → 1297
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  2. XM_032723110.1 → XP_032579001.1  putative transcription factor capicua isoform X1

    Related
    XP_032579001.1, XM_032723110.1
    Conserved Domains (2) summary
    cd01388
    Location:1226 → 1297
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  3. XM_032723115.1 → XP_032579006.1  putative transcription factor capicua isoform X6

    Related
    XP_032579006.1, XM_032723115.1
    Conserved Domains (2) summary
    cd01388
    Location:1222 → 1293
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  4. XM_032723112.1 → XP_032579003.1  putative transcription factor capicua isoform X3

    Related
    XP_032579003.1, XM_032723112.1
    Conserved Domains (2) summary
    cd01388
    Location:1222 → 1293
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  5. XM_032723113.1 → XP_032579004.1  putative transcription factor capicua isoform X4

    Related
    XP_032579004.1, XM_032723113.1
    Conserved Domains (2) summary
    cd01388
    Location:1226 → 1297
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  6. XM_032723109.1 → XP_032579000.1  putative transcription factor capicua isoform X1

    Related
    XP_032579000.1, XM_032723109.1
    Conserved Domains (2) summary
    cd01388
    Location:1226 → 1297
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  7. XM_032723114.1 → XP_032579005.1  putative transcription factor capicua isoform X5

    Related
    XP_032579005.1, XM_032723114.1
    Conserved Domains (2) summary
    cd01388
    Location:1226 → 1297
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam16090
    Location:351 → 433
    DUF4819; Domain of unknown function (DUF4819)

  8. XM_032723116.1 → XP_032579007.1  putative transcription factor capicua isoform X7

    Related
    XP_032579007.1, XM_032723116.1
    Conserved Domains (1) summary
    cd01388
    Location:485 → 556
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  9. XM_002043467.2 → XP_002043503.1  putative transcription factor capicua isoform X9

    See identical proteins and their annotated locations for XP_002043503.1

    UniProtKB/TrEMBL
    B4IIE3
    Related
    XP_002043503.1, XM_002043467.2
    Conserved Domains (1) summary
    cd01388
    Location:485 → 556
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  10. XM_032723117.1 → XP_032579008.1  putative transcription factor capicua isoform X8

    Related
    XP_032579008.1, XM_032723117.1
    Conserved Domains (1) summary
    cd01388
    Location:485 → 556
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.