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LOC6610995 E3 ubiquitin-protein ligase SHPRH [ Drosophila sechellia ]

Gene ID: 6610995, updated on 10-May-2024

Summary

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Gene symbol
LOC6610995
Gene description
E3 ubiquitin-protein ligase SHPRH
Locus tag
Dsec_GM14768
See related
EnsemblRapid:LOC6610995
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM14768; GM14768-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6610995 in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (6077566..6082243)

Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 13 Neighboring gene phosphatase 6 regulatory subunit 1-like protein fmt Neighboring gene zinc finger protein 91 Neighboring gene zinc finger protein 182 Neighboring gene uncharacterized LOC6610998

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045951.1 Chromosome 3L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase SHPRH
Names
Dsec\GM14768
Dsec\GM14768-PA
dsec_GLEANR_15515

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045951.1 Reference ASM438219v1

    Range
    6077566..6082243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032718117.1 → XP_032574008.1  E3 ubiquitin-protein ligase SHPRH isoform X1

    UniProtKB/TrEMBL
    B4HUR7
    Related
    XP_032574008.1, XM_032718117.1
    Conserved Domains (6) summary
    smart00028
    Location:636 → 669
    TPR; Tetratricopeptide repeats
    COG0553
    Location:23 → 608
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18793
    Location:1104 → 1225
    SF2_C_SNF; C-terminal helicase domain of the SNF family helicases
    cd18070
    Location:160 → 513
    DEXQc_SHPRH; DEXQ-box helicase domain of SHPRH
    cl17238
    Location:1036 → 1081
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl22851
    Location:281 → 320
    PHD_SF; PHD finger superfamily

  2. XM_032718118.1 → XP_032574009.1  E3 ubiquitin-protein ligase SHPRH isoform X2

    Related
    XP_032574009.1, XM_032718118.1
    Conserved Domains (4) summary
    smart00028
    Location:636 → 669
    TPR; Tetratricopeptide repeats
    COG0553
    Location:23 → 608
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18070
    Location:160 → 513
    DEXQc_SHPRH; DEXQ-box helicase domain of SHPRH
    cl22851
    Location:281 → 320
    PHD_SF; PHD finger superfamily
Nucleotide Protein Strain
Heading Accession and Version

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