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Srp54k signal recognition particle 54k [ Drosophila sechellia ]

Gene ID: 6610862, updated on 22-May-2024

Summary

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Gene symbol
Srp54k
Gene description
signal recognition particle 54k
Locus tag
Dsec_GM14699
See related
EnsemblRapid:LOC6610862
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM14699; GM14699-PA
Orthologs
fruit fly all
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Genomic context

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See Srp54k in Genome Data Viewer
Location:
chromosome: 3L
Exon count:
2
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 3L NC_045951.1 (5083080..5085170)

Chromosome 3L - NC_045951.1Genomic Context describing neighboring genes Neighboring gene flap endonuclease GEN Neighboring gene alanine--tRNA ligase, mitochondrial Neighboring gene ganglioside induced differentiation associated protein 1 Neighboring gene protein alan shepard Neighboring gene acyl-coenzyme A diphosphatase Fitm Neighboring gene uncharacterized LOC6610864 Neighboring gene transfer RNA serine (anticodon AGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045951.1 Chromosome 3L Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables endoplasmic reticulum signal peptide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in SRP-dependent cotranslational protein targeting to membrane, translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
signal recognition particle 54 kDa protein
Names
Dsec\GM14699
Dsec\GM14699-PA
dsec_GLEANR_15451

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045951.1 Reference ASM438219v1

    Range
    5083080..5085170
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002035392.2 → XP_002035428.1  signal recognition particle 54 kDa protein

    See identical proteins and their annotated locations for XP_002035428.1

    UniProtKB/TrEMBL
    B4HUE3
    Related
    XP_002035428.1, XM_002035392.2
    Conserved Domains (4) summary
    TIGR01425
    Location:2 → 428
    SRP54_euk; signal recognition particle protein SRP54
    pfam00448
    Location:102 → 294
    SRP54; SRP54-type protein, GTPase domain
    pfam02881
    Location:6 → 83
    SRP54_N; SRP54-type protein, helical bundle domain
    pfam02978
    Location:327 → 428
    SRP_SPB; Signal peptide binding domain
Nucleotide Protein Strain
Heading Accession and Version

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