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LOC6608211 protein patched [ Drosophila sechellia ]

Gene ID: 6608211, updated on 10-May-2024

Summary

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Gene symbol
LOC6608211
Gene description
protein patched
Locus tag
Dsec_GM21054
See related
EnsemblRapid:LOC6608211
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM21054; GM21054-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6608211 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
6
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (4904599..4919814)

Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene nucleoporin Gle1 Neighboring gene zinc finger CCCH domain-containing protein 15 homolog Neighboring gene uncharacterized LOC116800332 Neighboring gene Acyl-CoA synthetase long-chain Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045950.1 Chromosome 2R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hedgehog family protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hedgehog receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables smoothened binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein patched
Names
Dsec\GM21054
Dsec\GM21054-PA
dsec_GLEANR_3860

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045950.1 Reference ASM438219v1

    Range
    4904599..4919814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002032920.2 → XP_002032956.1  protein patched

    See identical proteins and their annotated locations for XP_002032956.1

    UniProtKB/TrEMBL
    B4HS06
    Related
    XP_002032956.1, XM_002032920.2
    Conserved Domains (2) summary
    TIGR00918
    Location:17 → 1134
    2A060602; The Eukaryotic (Putative) Sterol Transporter (EST) Family
    cl21543
    Location:454 → 598
    MMPL; MMPL family
Nucleotide Protein Strain
Heading Accession and Version

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Molecular Biology Databases
Research Materials