U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Upf1 Upf1 RNA helicase [ Drosophila persimilis ]

Gene ID: 6598302, updated on 22-May-2024

Summary

Go to the top of the page Help
Gene symbol
Upf1
Gene description
Upf1 RNA helicase
Locus tag
Dper_GL20399
See related
EnsemblRapid:LOC6598302
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL20399; GL20400; GL20399-PA; GL20400-PA
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Upf1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825322.1 (425508..430216, complement)

NW_020825322.1Genomic Context describing neighboring genes Neighboring gene poly(A) RNA polymerase gld-2 homolog B Neighboring gene NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 homolog sicily Neighboring gene inactivation no afterpotential E Neighboring gene aldose 1-epimerase Neighboring gene Transmembrane protein stas

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_020825322 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
regulator of nonsense transcripts 1 homolog
Names
Dper\GL20399
Dper\GL20399-PA
Dper\GL20400
Dper\GL20400-PA
dper_GLEANR_22737
dper_GLEANR_22738

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825322.1 Reference DperRS2

    Range
    425508..430216 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002023468.2 → XP_002023504.2  regulator of nonsense transcripts 1 homolog

    Related
    XP_002023504.2, XM_002023468.2
    Conserved Domains (1) summary
    COG1112
    Location:122 → 897
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.