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LOC659690 cytochrome c-2 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 659690, updated on 6-Jun-2024

Summary

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Gene symbol
LOC659690
Gene description
cytochrome c-2
Locus tag
TcasGA2_TC005841
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 6 NC_087399.1 (7554287..7557162)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG8 NC_007423.3 (6780005..6782846, complement)

Chromosome 6 - NC_087399.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135266519 Neighboring gene uncharacterized LOC103313927 Neighboring gene RNA polymerase I subunit Rpl135 Neighboring gene uncharacterized LOC135266463 Neighboring gene sodium-dependent noradrenaline transporter

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables electron transfer activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial electron transport, ubiquinol to cytochrome c IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cysteine-type endopeptidase activity involved in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial intermembrane space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytochrome c-2
Names
AUGUSTUS-3.0.2_05841
Cytochrome c-2-like Protein
GLEAN_05841

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087399.1 Reference icTriCast1.1 Primary Assembly

    Range
    7554287..7557162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_971011.4 → XP_976104.1  cytochrome c-2

    See identical proteins and their annotated locations for XP_976104.1

    UniProtKB/TrEMBL
    D6WVZ4
    Conserved Domains (1) summary
    cl21467
    Location:3 → 108
    Cytochrom_C; Cytochrome c

  2. XM_064357231.1 → XP_064213301.1  cytochrome c-2

    UniProtKB/TrEMBL
    D6WVZ4

  3. XM_015982532.1 → XP_015838018.1  cytochrome c-2

    UniProtKB/TrEMBL
    D6WVZ4
    Conserved Domains (1) summary
    cl21467
    Location:3 → 108
    Cytochrom_C; Cytochrome c

  4. XM_064357230.1 → XP_064213300.1  cytochrome c-2

    UniProtKB/TrEMBL
    D6WVZ4
Nucleotide Protein Strain
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