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Col4a1 Collagen type IV alpha 1 [ Drosophila persimilis ]

Gene ID: 6596363, updated on 15-May-2024

Summary

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Gene symbol
Col4a1
Gene description
Collagen type IV alpha 1
Locus tag
Dper_GL26543
See related
EnsemblRapid:LOC6596363
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL26543; GL26543-PA
Orthologs
fruit fly all
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Genomic context

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See Col4a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825294.1 (7771643..7778531)

NW_020825294.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase-like selenoprotein T homolog CG3887 Neighboring gene collagen alpha-1(IV) chain Neighboring gene uncharacterized LOC6596364 Neighboring gene SPRY domain-containing SOCS box protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825294 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-1(IV) chain
Names
Dper\GL26543
Dper\GL26543-PA
dper_GLEANR_9056

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825294.1 Reference DperRS2

    Range
    7771643..7778531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026987395.1 → XP_026843196.1  collagen alpha-1(IV) chain

    Related
    XP_026843196.1, XM_026987395.1
    Conserved Domains (2) summary
    pfam01391
    Location:577 → 635
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01413
    Location:1669 → 1780
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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