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Taf1 TATA-box binding protein associated factor 1 [ Drosophila persimilis ]

Gene ID: 6591745, updated on 15-May-2024

Summary

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Gene symbol
Taf1
Gene description
TATA-box binding protein associated factor 1
Locus tag
Dper_GL21765
See related
EnsemblRapid:LOC6591745
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila persimilis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GL21765; GL21765-PA
Orthologs
fruit fly all
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Genomic context

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See Taf1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
101 current DperRS2 (GCF_003286085.1) Unplaced Scaffold NW_020825288.1 (21080606..21090121, complement)

NW_020825288.1Genomic Context describing neighboring genes Neighboring gene regulatory protein ada Neighboring gene signal peptidase complex catalytic subunit SEC11 homolog C twr Neighboring gene probable peptidyl-tRNA hydrolase 2 Neighboring gene terminal uridylyltransferase Tailor Neighboring gene uncharacterized LOC6604219

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825288 Unplaced Scaffold Reference DperRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 1
Names
Dper\GL21765
Dper\GL21765-PA
dper_GLEANR_3849

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila persimilis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DperRS2

Genomic

  1. NW_020825288.1 Reference DperRS2

    Range
    21080606..21090121 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026984670.1 → XP_026840471.1  transcription initiation factor TFIID subunit 1 isoform X4

    UniProtKB/TrEMBL
    B4GEP8
    Related
    XP_026840471.1, XM_026984670.1
    Conserved Domains (4) summary
    cd05511
    Location:1487 → 1598
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:19 → 77
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:629 → 1094
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1362 → 1392
    zf-CCHC_6; Zinc knuckle

  2. XM_026984669.1 → XP_026840470.1  transcription initiation factor TFIID subunit 1 isoform X3

    UniProtKB/TrEMBL
    B4GEP8
    Related
    XP_026840470.1, XM_026984669.1
    Conserved Domains (4) summary
    cd05511
    Location:1487 → 1598
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:19 → 77
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:629 → 1094
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1362 → 1392
    zf-CCHC_6; Zinc knuckle

  3. XM_026984668.1 → XP_026840469.1  transcription initiation factor TFIID subunit 1 isoform X2

    UniProtKB/TrEMBL
    B4GEP8
    Related
    XP_026840469.1, XM_026984668.1
    Conserved Domains (4) summary
    cd05511
    Location:1487 → 1598
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:19 → 77
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:629 → 1094
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1362 → 1392
    zf-CCHC_6; Zinc knuckle

  4. XM_026984667.1 → XP_026840468.1  transcription initiation factor TFIID subunit 1 isoform X1

    UniProtKB/TrEMBL
    B4GEP8
    Related
    XP_026840468.1, XM_026984667.1
    Conserved Domains (4) summary
    cd05511
    Location:1487 → 1598
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:19 → 77
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:629 → 1094
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1362 → 1392
    zf-CCHC_6; Zinc knuckle
Nucleotide Protein
Heading Accession and Version

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