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LOC6579000 protein Optix [ Drosophila mojavensis ]

Gene ID: 6579000, updated on 10-May-2024

Summary

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Gene symbol
LOC6579000
Gene description
protein Optix
Locus tag
Dmoj_GI19347
See related
EnsemblRapid:LOC6579000
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila mojavensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
Also known as
GI19347; GI19347-PB
Orthologs
fruit fly all
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Genomic context

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See LOC6579000 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM1815372v1 (GCF_018153725.1) Unplaced Scaffold NW_025318906.1 (7143828..7159576, complement)
101 previous assembly dmoj_caf1 (GCF_000005175.2) Unplaced Scaffold NW_001979114.1 (7077637..7093752, complement)

NW_025318906.1Genomic Context describing neighboring genes Neighboring gene protein lingerer Neighboring gene 1-phosphatidylinositol 3-phosphate 5-kinase Neighboring gene uncharacterized LOC122757702 Neighboring gene uncharacterized LOC122757688

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential selection within the Drosophila retinal determination network and evidence for functional divergence between paralog pairs. Datta RR, et al. Evol Dev, 2011 Jan-Feb. PMID 21210943, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein Optix
Names
Dmoj\GI19347
Dmoj\GI19347-PB
dmoj_GLEANR_4280

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila mojavensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815372v1

Genomic

  1. NW_025318906.1 Reference ASM1815372v1

    Range
    7143828..7159576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032730250.2 → XP_032586141.1  protein Optix

    UniProtKB/TrEMBL
    B4KMU0
    Related
    XP_032586141.1, XM_032730250.2
    Conserved Domains (2) summary
    cd00086
    Location:158 → 206
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam16878
    Location:37 → 150
    SIX1_SD; Transcriptional regulator, SIX1, N-terminal SD domain
Nucleotide Protein
Heading Accession and Version

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