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LOC657601 lysine-specific demethylase 7B [ Tribolium castaneum (red flour beetle) ]

Gene ID: 657601, updated on 12-Apr-2024

Summary

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Gene symbol
LOC657601
Gene description
lysine-specific demethylase 7B
Locus tag
TcasGA2_TC010820
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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See LOC657601 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (6730103..6735184)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (6075892..6080967)

Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene somatostatin receptor type 4 Neighboring gene forkhead box protein P1 Neighboring gene Calcium and integrin binding family member 2 Neighboring gene microRNA mir-3830 Neighboring gene hypothetical protein Neighboring gene protein FAM8A1 Neighboring gene uncharacterized LOC107398715

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 7B
Names
AUGUSTUS-3.0.2_10820
GLEAN_10820
Histone lysine demethylase PHF8-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

    Range
    6730103..6735184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_964052.4 → XP_969145.1  lysine-specific demethylase 7B

    See identical proteins and their annotated locations for XP_969145.1

    UniProtKB/TrEMBL
    D6W7H8
    Conserved Domains (2) summary
    cd15554
    Location:5 → 51
    PHD_PHF2_like; PHD finger found in PHF2, PHF8 and KDM7
    cl21464
    Location:235 → 335
    cupin_like; Conserved domain found in cupin and related proteins
Nucleotide Protein Strain
Heading Accession and Version

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