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LOC657339 acyl-CoA Delta(11) desaturase [ Tribolium castaneum (red flour beetle) ]

Gene ID: 657339, updated on 12-Apr-2024

Summary

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Gene symbol
LOC657339
Gene description
acyl-CoA Delta(11) desaturase
Locus tag
TcasGA2_TC015382
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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Genomic context

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Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 8 NC_087401.1 (17491239..17492295, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG6 NC_007421.3 (116192..117248)

Chromosome 8 - NC_087401.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135266860 Neighboring gene acyl-CoA Delta(11) desaturase Neighboring gene uncharacterized LOC135266857 Neighboring gene acyl-CoA Delta(11) desaturase-like Neighboring gene uncharacterized LOC656943 Neighboring gene uncharacterized LOC103313299 Neighboring gene Mediator complex subunit 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unexpected functional diversity in the fatty acid desaturases of the flour beetle Tribolium castaneum and identification of key residues determining activity. Haritos VS, et al. Insect Biochem Mol Biol, 2014 Aug. PMID 24880119
  2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables stearoyl-CoA 9-desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in unsaturated fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acyl-CoA Delta(11) desaturase
Names
GLEAN_15382
fatty acid desaturase D2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001319266.1 → NP_001306195.1  acyl-CoA Delta(11) desaturase

    Status: PROVISIONAL

    Source sequence(s)
    KF576668
    UniProtKB/TrEMBL
    D2A4K3
    Conserved Domains (2) summary
    cd03505
    Location:39 → 280
    Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
    pfam00487
    Location:43 → 247
    FA_desaturase; Fatty acid desaturase

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087401.1 Reference icTriCast1.1 Primary Assembly

    Range
    17491239..17492295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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