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Mitf transcription factor Mitf [ Drosophila grimshawi ]

Gene ID: 6570264, updated on 14-May-2024

Summary

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Gene symbol
Mitf
Gene description
transcription factor Mitf
Locus tag
Dgri_GH23990
See related
EnsemblRapid:LOC6570264
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH23990; GH23990-PA
Orthologs
fruit fly all
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Genomic context

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See Mitf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063639.1 (936436..947228, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961686.1 (312069..322856)

NW_025063639.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6570266 Neighboring gene ADP-ribosylation factor 2 Neighboring gene phosphatidylinositol 5-phosphate 4-kinase Neighboring gene LIM domain and actin-binding protein 1 Neighboring gene uncharacterized LOC6570277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helix-loop-helix protein 30; microphthalmia-associated transcription factor
Names
Dgri\GH23990
Dgri\GH23990-PA
dgri_GLEANR_8641

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063639.1 Reference ASM1815329v1

    Range
    936436..947228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032741977.2 → XP_032597868.1  microphthalmia-associated transcription factor isoform X3

    UniProtKB/TrEMBL
    B4JZR5
    Related
    XP_032597868.1, XM_032741977.2
    Conserved Domains (2) summary
    cd11397
    Location:419 → 492
    bHLHzip_MITF_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family
    pfam15951
    Location:104 → 208
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  2. XM_032741974.2 → XP_032597865.1  microphthalmia-associated transcription factor isoform X2

    UniProtKB/TrEMBL
    B4JZR5
    Related
    XP_032597865.1, XM_032741974.2
    Conserved Domains (2) summary
    cd11397
    Location:463 → 536
    bHLHzip_MITF_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family
    pfam15951
    Location:130 → 259
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  3. XM_032741973.2 → XP_032597864.1  microphthalmia-associated transcription factor isoform X1

    UniProtKB/TrEMBL
    B4JZR5
    Related
    XP_032597864.1, XM_032741973.2
    Conserved Domains (2) summary
    cd11397
    Location:470 → 543
    bHLHzip_MITF_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family
    pfam15951
    Location:130 → 259
    MITF_TFEB_C_3_N; MITF/TFEB/TFEC/TFE3 N-terminus

  4. XM_032741978.2 → XP_032597869.1  helix-loop-helix protein 30 isoform X4

    Related
    XP_032597869.1, XM_032741978.2
    Conserved Domains (1) summary
    cd11397
    Location:133 → 206
    bHLHzip_MITF_like; basic Helix-Loop-Helix-zipper (bHLHzip) domain found in the microphthalmia-associated transcription factor family (MITF) family
Nucleotide Protein
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