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HDAC6 histone deacetylase 6 [ Drosophila grimshawi ]

Gene ID: 6569456, updated on 22-May-2024

Summary

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Gene symbol
HDAC6
Gene description
histone deacetylase 6
Locus tag
Dgri_GH17575
See related
EnsemblRapid:LOC6569456
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH17575; GH17575-PA
Orthologs
fruit fly all
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Genomic context

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See HDAC6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063692.1 (3484180..3491503, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961682.1 (3455322..3462653, complement)

NW_025063692.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA processing factor 5 Neighboring gene p21-activated protein kinase-interacting protein 1-like Neighboring gene pleckstrin homology domain-containing family F member 1 homolog Neighboring gene stubarista 40S ribosomal protein SA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 6
Names
Dgri\GH17575
Dgri\GH17575-PA
dgri_GLEANR_1989

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063692.1 Reference ASM1815329v1

    Range
    3484180..3491503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032741469.2 → XP_032597360.1  histone deacetylase 6 isoform X3

    UniProtKB/TrEMBL
    B4JXG4
    Related
    XP_032597360.1, XM_032741469.2
    Conserved Domains (2) summary
    cd10002
    Location:113 → 451
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    cl17011
    Location:545 → 904
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_032741467.2 → XP_032597358.1  histone deacetylase 6 isoform X1

    UniProtKB/TrEMBL
    B4JXG4
    Related
    XP_032597358.1, XM_032741467.2
    Conserved Domains (4) summary
    cd10002
    Location:113 → 451
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    COG5207
    Location:899 → 1072
    UBP14; Uncharacterized Zn-finger protein, UBP-type [General function prediction only]
    pfam02148
    Location:1020 → 1084
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein
    cl17011
    Location:545 → 904
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  3. XM_032741468.2 → XP_032597359.1  histone deacetylase 6 isoform X2

    UniProtKB/TrEMBL
    B4JXG4
    Related
    XP_032597359.1, XM_032741468.2
    Conserved Domains (2) summary
    cd10002
    Location:113 → 451
    HDAC10_HDAC6-dom1; Histone deacetylase 6, domain 1 and histone deacetylase 10
    cl17011
    Location:545 → 904
    Arginase_HDAC; Arginase-like and histone-like hydrolases
Nucleotide Protein
Heading Accession and Version

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