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LOC6569142 calbindin-32 [ Drosophila grimshawi ]

Gene ID: 6569142, updated on 10-May-2024

Summary

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Gene symbol
LOC6569142
Gene description
calbindin-32
Locus tag
Dgri_GH22953
See related
EnsemblRapid:LOC6569142
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH22953; GH22953-PA
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (2954567..2986369, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961681.1 (1053933..1085386)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene CAAX prenyl protease 1 homolog Neighboring gene CAAX prenyl protease 1 homolog Neighboring gene uncharacterized LOC6569143 Neighboring gene GPI mannosyltransferase 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene uncharacterized LOC6569065

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of long-term synaptic potentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of presynaptic cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in terminal bouton IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calbindin-32
Names
Dgri\GH22953
Dgri\GH22953-PA
dgri_GLEANR_7261

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    2954567..2986369 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001995040.3 → XP_001995076.1  calbindin-32 isoform X2

    See identical proteins and their annotated locations for XP_001995076.1

    UniProtKB/TrEMBL
    B4JW10
    Related
    XP_001995076.1, XM_001995040.3
    Conserved Domains (3) summary
    COG5126
    Location:22 → 159
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:135 → 206
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:137 → 206
    EF-hand_7; EF-hand domain pair

  2. XM_032741192.2 → XP_032597083.1  calbindin-32 isoform X1

    Related
    XP_032597083.1, XM_032741192.2
    Conserved Domains (1) summary
    cd16179
    Location:40 → 305
    EFh_HEF_CBN; EF-hand, calcium binding motif, found in Drosophila melanogaster calbindin-32 (CBN) and similar proteins
Nucleotide Protein
Heading Accession and Version

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