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LOC6561314 alpha-N-acetylgalactosaminidase [ Drosophila grimshawi ]

Gene ID: 6561314, updated on 10-May-2024

Summary

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Gene symbol
LOC6561314
Gene description
alpha-N-acetylgalactosaminidase
Locus tag
Dgri_GH21921
See related
EnsemblRapid:LOC6561314
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH21921; GH21921-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6561314 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062891.1 (4903140..4905977)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (15083870..15086707)

NW_025062891.1Genomic Context describing neighboring genes Neighboring gene U3 small nucleolar RNA-associated protein 18 homolog wicked Neighboring gene nuclear pore glycoprotein p62 Neighboring gene hydroxymethylglutaryl-CoA synthase 1 Neighboring gene V-type proton ATPase subunit Vha44

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-galactosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminidase
Names
Dgri\GH21921
Dgri\GH21921-PA
dgri_GLEANR_6039

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062891.1 Reference ASM1815329v1

    Range
    4903140..4905977
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001987406.2 → XP_001987442.1  alpha-N-acetylgalactosaminidase

    See identical proteins and their annotated locations for XP_001987442.1

    UniProtKB/TrEMBL
    B4J8F0
    Related
    XP_001987442.1, XM_001987406.2
    Conserved Domains (1) summary
    cl07893
    Location:25 → 402
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

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Research Materials