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kn EBF transcription factor knot [ Drosophila grimshawi ]

Gene ID: 6560088, updated on 23-May-2024

Summary

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Gene symbol
kn
Gene description
EBF transcription factor knot
Locus tag
Dgri_GH12956
See related
EnsemblRapid:LOC6560088
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH12956; GH20479; GH12956-PA; GH20479-PA
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025062889.1 (11660712..11695965, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961673.1 (7634338..7669597, complement)

NW_025062889.1Genomic Context describing neighboring genes Neighboring gene patronin Neighboring gene Boundary element-associated factor of 32kD Neighboring gene hase und igel Neighboring gene glucose 1,6-bisphosphate synthase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor collier
Names
Dgri\GH12956
Dgri\GH12956-PA
Dgri\GH20479
Dgri\GH20479-PA
EBF transcription factor-like knot
dgri_GLEANR_12886
dgri_GLEANR_4726

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025062889.1 Reference ASM1815329v1

    Range
    11660712..11695965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001986492.3 → XP_001986528.2  transcription factor collier isoform X1

    UniProtKB/TrEMBL
    B4J9B4
    Related
    XP_001986528.2, XM_001986492.3

  2. XM_032734664.2 → XP_032590555.2  transcription factor collier isoform X2

    UniProtKB/TrEMBL
    B4J9B4
    Related
    XP_032590555.2, XM_032734664.2
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials