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PDCD-5 programmed cell death 5 [ Drosophila grimshawi ]

Gene ID: 6557744, updated on 22-May-2024

Summary

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Gene symbol
PDCD-5
Gene description
programmed cell death 5
Locus tag
Dgri_GH15624
See related
EnsemblRapid:LOC6557744
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH15624; GH15624-PA
Orthologs
fruit fly all
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Genomic context

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See PDCD-5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063240.1 (21298286..21299297)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961672.1 (2327903..2328919, complement)

NW_025063240.1Genomic Context describing neighboring genes Neighboring gene transfer RNA isoleucine (anticodon UAU) Neighboring gene mediator complex subunit 10 Neighboring gene UTP4 small subunit processome component l(3)72Dn Neighboring gene Thioredoxin-related transmembrane protein 3 Neighboring gene uncharacterized LOC116806488 Neighboring gene Dicarboxylate carrier 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
programmed cell death protein 5
Names
Dgri\GH15624
Dgri\GH15624-PA
dgri_GLEANR_15393

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063240.1 Reference ASM1815329v1

    Range
    21298286..21299297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001983329.3 → XP_001983365.1  programmed cell death protein 5

    See identical proteins and their annotated locations for XP_001983365.1

    UniProtKB/TrEMBL
    B4J0B2
    Related
    XP_001983365.1, XM_001983329.3
    Conserved Domains (1) summary
    pfam01984
    Location:9 → 106
    dsDNA_bind; Double-stranded DNA-binding domain
Nucleotide Protein
Heading Accession and Version

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