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LOC6557221 probable deoxycytidylate deaminase [ Drosophila grimshawi ]

Gene ID: 6557221, updated on 10-May-2024

Summary

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Gene symbol
LOC6557221
Gene description
probable deoxycytidylate deaminase
Locus tag
Dgri_GH15113
See related
EnsemblRapid:LOC6557221
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH15113; GH15113-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6557221 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063240.1 (14442685..14445260)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961672.1 (9169212..9171836, complement)

NW_025063240.1Genomic Context describing neighboring genes Neighboring gene retinal degeneration C Neighboring gene putative mediator of RNA polymerase II transcription subunit 12 Neighboring gene clathrin light chain Neighboring gene lysine-specific histone demethylase Su(var)3-3 Neighboring gene peritrophin-48

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dCMP deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dTMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dUMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable deoxycytidylate deaminase
Names
Dgri\GH15113
Dgri\GH15113-PA
dgri_GLEANR_14930

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063240.1 Reference ASM1815329v1

    Range
    14442685..14445260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001984212.3 → XP_001984248.1  probable deoxycytidylate deaminase

    See identical proteins and their annotated locations for XP_001984248.1

    UniProtKB/TrEMBL
    B4IYQ9
    Related
    XP_001984248.1, XM_001984212.3
    Conserved Domains (1) summary
    cd01286
    Location:34 → 158
    deoxycytidylate_deaminase; Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the ...
Nucleotide Protein
Heading Accession and Version

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