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TrpA1 Transient receptor potential cation channel A1 [ Drosophila grimshawi ]

Gene ID: 6557138, updated on 16-May-2024

Summary

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Gene symbol
TrpA1
Gene description
Transient receptor potential cation channel A1
Locus tag
Dgri_GH16133
See related
EnsemblRapid:LOC6557138
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila grimshawi
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila
Also known as
GH16133; GH16134; GH16133-PA; GH16134-PA
Orthologs
fruit fly all
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Genomic context

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See TrpA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current ASM1815329v1 (GCF_018153295.1) Unplaced Scaffold NW_025063240.1 (17421612..17432468, complement)
102 previous assembly dgri_caf1 (GCF_000005155.2) Unplaced Scaffold NW_001961672.1 (6188377..6199240)

NW_025063240.1Genomic Context describing neighboring genes Neighboring gene division abnormally delayed protein Neighboring gene uncharacterized LOC116805109 Neighboring gene minichromosome maintenance 7 Neighboring gene myoferlin Neighboring gene tetraspanin-18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transient receptor potential cation channel subfamily A member 1
Names
Dgri\GH16133
Dgri\GH16133-PA
Dgri\GH16134
Dgri\GH16134-PA
dgri_GLEANR_15858
dgri_GLEANR_15859

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila grimshawi Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1815329v1

Genomic

  1. NW_025063240.1 Reference ASM1815329v1

    Range
    17421612..17432468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032742733.2 → XP_032598624.1  transient receptor potential cation channel subfamily A member 1 isoform X3

    UniProtKB/TrEMBL
    B4J3L7
    Related
    XP_032598624.1, XM_032742733.2
    Conserved Domains (5) summary
    PHA02874
    Location:261 → 559
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:450 → 481
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:198 → 251
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:67 → 155
    Ank_2; Ankyrin repeats (3 copies)
    cl40437
    Location:453 → 1066
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  2. XM_032742731.2 → XP_032598622.1  transient receptor potential cation channel subfamily A member 1 isoform X1

    UniProtKB/TrEMBL
    B4J3L7
    Related
    XP_032598622.1, XM_032742731.2
    Conserved Domains (5) summary
    PHA02874
    Location:329 → 627
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:518 → 549
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:266 → 319
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:135 → 223
    Ank_2; Ankyrin repeats (3 copies)
    cl40437
    Location:521 → 1134
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  3. XM_032742734.2 → XP_032598625.1  transient receptor potential cation channel subfamily A member 1 isoform X4

    UniProtKB/TrEMBL
    B4J3L7
    Related
    XP_032598625.1, XM_032742734.2
    Conserved Domains (5) summary
    PHA02874
    Location:261 → 559
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:450 → 481
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:198 → 251
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:67 → 155
    Ank_2; Ankyrin repeats (3 copies)
    cl40437
    Location:453 → 1065
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)

  4. XM_032742732.2 → XP_032598623.1  transient receptor potential cation channel subfamily A member 1 isoform X2

    UniProtKB/TrEMBL
    B4J3L7
    Related
    XP_032598623.1, XM_032742732.2
    Conserved Domains (5) summary
    PHA02874
    Location:329 → 627
    PHA02874; ankyrin repeat protein; Provisional
    sd00045
    Location:518 → 549
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:266 → 319
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:135 → 223
    Ank_2; Ankyrin repeats (3 copies)
    cl40437
    Location:521 → 1133
    TRPV; Transient Receptor Potential channel, Vanilloid subfamily (TRPV)
Nucleotide Protein
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