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LOC6552924 replication protein A 70 kDa DNA-binding subunit [ Drosophila erecta ]

Gene ID: 6552924, updated on 21-Dec-2023

Summary

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Gene symbol
LOC6552924
Gene description
replication protein A 70 kDa DNA-binding subunit
Locus tag
Dere_GG17466
See related
EnsemblRapid:LOC6552924
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG17466; GG17466-PA
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Genomic context

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See LOC6552924 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825194.1 (11004643..11006932, complement)

NW_020825194.1Genomic Context describing neighboring genes Neighboring gene mind the gap Neighboring gene uncharacterized LOC113564704 Neighboring gene replication protein A 70 kDa DNA-binding subunit Neighboring gene DNA replication licensing factor Mcm2 Neighboring gene probable ATP-dependent RNA helicase DDX55 homolog Neighboring gene protein atonal

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825194 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA unwinding involved in DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nucleotide-excision repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of DNA replication factor A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
replication protein A 70 kDa DNA-binding subunit
Names
Dere\GG17466
Dere\GG17466-PA
dere_GLEANR_2349

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825194.1 Reference DereRS2

    Range
    11004643..11006932 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001980961.3 → XP_001980997.1  replication protein A 70 kDa DNA-binding subunit

    See identical proteins and their annotated locations for XP_001980997.1

    UniProtKB/TrEMBL
    B3NZV7
    Related
    XP_001980997.1, XM_001980961.3
    Conserved Domains (5) summary
    cd04474
    Location:168 → 270
    RPA1_DBD_A; RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
    cd04475
    Location:301 → 401
    RPA1_DBD_B; RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which ...
    TIGR00617
    Location:3 → 595
    rpa1; replication factor-a protein 1 (rpa1)
    pfam04057
    Location:6 → 107
    Rep-A_N; Replication factor-A protein 1, N-terminal domain
    pfam08646
    Location:444 → 589
    Rep_fac-A_C; Replication factor-A C terminal domain
Nucleotide Protein
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