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LOC6552366 ubiquitin thioesterase trabid [ Drosophila erecta ]

Gene ID: 6552366, updated on 21-Dec-2023

Summary

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Gene symbol
LOC6552366
Gene description
ubiquitin thioesterase trabid
Locus tag
Dere_GG17341
See related
EnsemblRapid:LOC6552366
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG17341; GG17341-PA; GG17341-PB; GG17341-PC
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Genomic context

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See LOC6552366 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825194.1 (12429307..12433925, complement)

NW_020825194.1Genomic Context describing neighboring genes Neighboring gene transmembrane emp24 domain-containing protein eca Neighboring gene uncharacterized LOC6552368 Neighboring gene actin-binding LIM protein 2 Neighboring gene protein dalmatian Neighboring gene small Cajal body-specific RNA PsiU1-6 Neighboring gene ubiquitin thioesterase trabid Neighboring gene ubiquitin thioesterase trabid-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825194 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K29-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K33-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin thioesterase trabid
Names
Dere\GG17341
Dere\GG17341-PA
Dere\GG17341-PB
Dere\GG17341-PC
dere_GLEANR_2235

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825194.1 Reference DereRS2

    Range
    12429307..12433925 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015154500.2 → XP_015009986.2  ubiquitin thioesterase trabid

    UniProtKB/TrEMBL
    B3NZM2
    Related
    XP_015009986.2, XM_015154500.2
    Conserved Domains (4) summary
    smart00547
    Location:235 → 256
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:11 → 30
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam00641
    Location:11 → 36
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam02338
    Location:513 → 659
    OTU; OTU-like cysteine protease
Nucleotide Protein
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