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Snx27 sorting nexin 27 [ Drosophila erecta ]

Gene ID: 6551294, updated on 22-May-2024

Summary

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Gene symbol
Snx27
Gene description
sorting nexin 27
Locus tag
Dere_GG18475
See related
EnsemblRapid:LOC6551294
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG18475; GG18475-PA; GG18475-PB
Orthologs
fruit fly all
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Genomic context

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See Snx27 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825212.1 (212854..226024, complement)

NW_020825212.1Genomic Context describing neighboring genes Neighboring gene protein twisted gastrulation Neighboring gene protein RFT1 homolog Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif B Neighboring gene myogenesis-regulating glycosidase Neighboring gene uncharacterized LOC6551295 Neighboring gene integrator complex subunit 6 Neighboring gene Regulator of telomere elongation helicase 1 Neighboring gene pre-mRNA-splicing regulator female-lethal(2)D Neighboring gene protein lin-52 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825212 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-27
Names
Dere\GG18475
Dere\GG18475-PA
Dere\GG18475-PB
dere_GLEANR_3308

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825212.1 Reference DereRS2

    Range
    212854..226024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001976964.3 → XP_001977000.1  sorting nexin-27 isoform X1

    See identical proteins and their annotated locations for XP_001977000.1

    UniProtKB/TrEMBL
    B3NSV8
    Related
    XP_001977000.1, XM_001976964.3
    Conserved Domains (4) summary
    cd06886
    Location:171 → 276
    PX_SNX27; The phosphoinositide binding Phox Homology domain of Sorting Nexin 27
    cd00992
    Location:52 → 144
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd13338
    Location:434 → 534
    FERM-like_C_SNX27; Atypical FERM-like domain C-lobe of Sorting nexin 27
    cl00155
    Location:284 → 369
    UBQ; Ubiquitin-like proteins

  2. XM_026982784.1 → XP_026838585.1  sorting nexin-27 isoform X2

    Related
    XP_026838585.1, XM_026982784.1
    Conserved Domains (3) summary
    cd13338
    Location:237 → 337
    FERM-like_C_SNX27; Atypical FERM-like domain C-lobe of Sorting nexin 27
    cl00155
    Location:87 → 172
    UBQ; Ubiquitin-like proteins
    cl02563
    Location:1 → 79
    PX_domain; The Phox Homology domain, a phosphoinositide binding module

  3. XM_015155440.2 → XP_015010926.2  sorting nexin-27 isoform X3

    UniProtKB/TrEMBL
    A0A0Q5T2V3
    Related
    XP_015010926.2, XM_015155440.2
    Conserved Domains (4) summary
    cd06886
    Location:122 → 227
    PX_SNX27; The phosphoinositide binding Phox Homology domain of Sorting Nexin 27
    cd00992
    Location:67 → 95
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd13338
    Location:385 → 485
    FERM-like_C_SNX27; Atypical FERM-like domain C-lobe of Sorting nexin 27
    cl00155
    Location:235 → 320
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

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