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Usp39 ubiquitin specific protease 39 [ Drosophila erecta ]

Gene ID: 6550207, updated on 22-May-2024

Summary

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Gene symbol
Usp39
Gene description
ubiquitin specific protease 39
Locus tag
Dere_GG19194
See related
EnsemblRapid:LOC6550207
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG19194; GG19194-PA
Orthologs
fruit fly all
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Genomic context

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See Usp39 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825209.1 (6566532..6568445)

NW_020825209.1Genomic Context describing neighboring genes Neighboring gene mucin-19 Neighboring gene probable sulfite oxidase, mitochondrial Neighboring gene L-xylulose reductase Neighboring gene uncharacterized LOC6550208 Neighboring gene uncharacterized LOC6550209 Neighboring gene zinc finger SWIM domain-containing protein 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825209 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6.U5 tri-snRNP-associated protein 2
Names
Dere\GG19194
Dere\GG19194-PA
dere_GLEANR_3961

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825209.1 Reference DereRS2

    Range
    6566532..6568445
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026981771.1 → XP_026837572.1  U4/U6.U5 tri-snRNP-associated protein 2 isoform X2

    Related
    XP_026837572.1, XM_026981771.1
    Conserved Domains (1) summary
    cd02669
    Location:38 → 487
    Peptidase_C19M; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_001977682.3 → XP_001977718.1  U4/U6.U5 tri-snRNP-associated protein 2 isoform X1

    See identical proteins and their annotated locations for XP_001977718.1

    UniProtKB/TrEMBL
    B3NUP8
    Related
    XP_001977718.1, XM_001977682.3
    Conserved Domains (2) summary
    cd02669
    Location:39 → 488
    Peptidase_C19M; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:158 → 487
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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