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LOC6547163 pre-mRNA-splicing factor Syf2 [ Drosophila erecta ]

Gene ID: 6547163, updated on 10-May-2024

Summary

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Gene symbol
LOC6547163
Gene description
pre-mRNA-splicing factor Syf2
Locus tag
Dere_GG22714
See related
EnsemblRapid:LOC6547163
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila erecta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GG22714; GG22714-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6547163 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
101 current DereRS2 (GCF_003286155.1) Unplaced Scaffold NW_020825207.1 (3641803..3642713, complement)

NW_020825207.1Genomic Context describing neighboring genes Neighboring gene Proteasome beta5 subunit Neighboring gene uncharacterized LOC6547164 Neighboring gene periodic tryptophan protein 2 homolog Neighboring gene glycine receptor subunit alpha-2 Neighboring gene LTV1 ribosome biogenesis factor

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020825207 Unplaced Scaffold Reference DereRS2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor Syf2
Names
Dere\GG22714
Dere\GG22714-PA
dere_GLEANR_7419

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila erecta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DereRS2

Genomic

  1. NW_020825207.1 Reference DereRS2

    Range
    3641803..3642713 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001976128.3 → XP_001976164.1  pre-mRNA-splicing factor Syf2

    See identical proteins and their annotated locations for XP_001976164.1

    UniProtKB/TrEMBL
    B3NN44
    Related
    XP_001976164.1, XM_001976128.3
    Conserved Domains (1) summary
    pfam08231
    Location:71 → 221
    SYF2; SYF2 splicing factor
Nucleotide Protein
Heading Accession and Version

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