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Snx16 sorting nexin 16 [ Drosophila yakuba ]

Gene ID: 6531211, updated on 23-May-2024

Summary

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Gene symbol
Snx16
Gene description
sorting nexin 16
Locus tag
Dyak_GE13969
See related
EnsemblRapid:LOC6531211
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE13969; GE13969-PA
Orthologs
fruit fly all
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Genomic context

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See Snx16 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 2R NC_052528.2 (18235737..18237575)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 2R NC_052528.1 (18235876..18237602)

Chromosome 2R - NC_052528.2Genomic Context describing neighboring genes Neighboring gene hyccin Neighboring gene tRNA N(3)-methylcytidine methyltransferase METTL6 Neighboring gene uncharacterized LOC6531209 Neighboring gene ataxin-10 Neighboring gene uncharacterized LOC6531213 Neighboring gene Dachs ligand with SH3s Neighboring gene protein FAM13A Neighboring gene uncharacterized LOC26536359

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An evolutionary analysis of orphan genes in Drosophila. Domazet-Loso T, et al. Genome Res, 2003 Oct. PMID 14525923, Free PMC Article
  2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to late endosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extrinsic component of endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-16
Names
Dyak\CG6410
Dyak\GE13969
Dyak\GE13969-PA
dyak_GLEANR_14132

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052528.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    18235737..18237575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002092003.4 → XP_002092039.1  sorting nexin-16

    See identical proteins and their annotated locations for XP_002092039.1

    UniProtKB/TrEMBL
    B4P550
    Related
    XP_002092039.1, XM_002092003.4
    Conserved Domains (1) summary
    cd07276
    Location:220 → 330
    PX_SNX16; The phosphoinositide binding Phox Homology domain of Sorting Nexin 16
Nucleotide Protein Strain
Heading Accession and Version

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