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Nup54 nuclear pore complex protein Nup54 [ Drosophila yakuba ]

Gene ID: 6530105, updated on 15-May-2024

Summary

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Gene symbol
Nup54
Gene description
nuclear pore complex protein Nup54
Locus tag
Dyak_GE13448
See related
EnsemblRapid:LOC6530105
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE13448; GE13448-PA; GE13448-PB
Orthologs
fruit fly all
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Genomic context

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See Nup54 in Genome Data Viewer
Location:
chromosome: 2R
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 2R NC_052528.2 (11201043..11203694)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 2R NC_052528.1 (11201076..11203727)

Chromosome 2R - NC_052528.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 18 Neighboring gene Deubiquitinating apoptotic inhibitor Neighboring gene uncharacterized LOC26536242 Neighboring gene uncharacterized LOC6530106 Neighboring gene deoxyribose-phosphate aldolase Neighboring gene putative ATPase N2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear pore organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore central transport channel IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable nucleoporin Nup54
Names
Dyak\GE13448
Dyak\GE13448-PA
Dyak\GE13448-PB
dyak_GLEANR_13658

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052528.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    11201043..11203694
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015197111.2 → XP_015052597.1  probable nucleoporin Nup54 isoform X1

    UniProtKB/TrEMBL
    B4P5A1
    Related
    XP_015052597.1, XM_015197111.2
    Conserved Domains (2) summary
    pfam13634
    Location:121 → 196
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:412 → 546
    Nup54; Nucleoporin complex subunit 54

  2. XM_002091015.3 → XP_002091051.1  probable nucleoporin Nup54 isoform X1

    See identical proteins and their annotated locations for XP_002091051.1

    UniProtKB/TrEMBL
    B4P5A1
    Related
    XP_002091051.1, XM_002091015.3
    Conserved Domains (2) summary
    pfam13634
    Location:121 → 196
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:412 → 546
    Nup54; Nucleoporin complex subunit 54

  3. XM_039372537.1 → XP_039228471.1  probable nucleoporin Nup54 isoform X2

    Related
    XP_039228471.1, XM_039372537.1
    Conserved Domains (3) summary
    pfam13634
    Location:124 → 219
    Nucleoporin_FG; Nucleoporin FG repeat region
    pfam13874
    Location:408 → 545
    Nup54; Nucleoporin complex subunit 54
    pfam18437
    Location:561 → 599
    Nup54_C; Nup54 C-terminal interacting domain
Nucleotide Protein Strain
Heading Accession and Version

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