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TfIIB transcription factor IIB [ Drosophila yakuba ]

Gene ID: 6528053, updated on 23-May-2024

Summary

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Gene symbol
TfIIB
Gene description
transcription factor IIB
Locus tag
Dyak_GE18945
See related
EnsemblRapid:LOC6528053
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE18945; GE18945-PA
Orthologs
fruit fly all
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Genomic context

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See TfIIB in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 2L NC_052527.2 (13242090..13243782)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 2L NC_052527.1 (13242091..13243783)

Chromosome 2L - NC_052527.2Genomic Context describing neighboring genes Neighboring gene ER lumen protein-retaining receptor Neighboring gene methionine aminopeptidase 1D, mitochondrial Neighboring gene cilia- and flagella-associated protein 20 Neighboring gene TBC1 domain family member 16 Neighboring gene CD2 antigen cytoplasmic tail-binding protein 2 homolog holn1 Neighboring gene Krueppel homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription preinitiation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIB
Names
Dyak\GE18945
Dyak\GE18945-PA
dyak_GLEANR_2727

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052527.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    13242090..13243782
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002089084.3 → XP_002089120.1  transcription initiation factor IIB

    See identical proteins and their annotated locations for XP_002089120.1

    UniProtKB/TrEMBL
    B4NZP8
    Related
    XP_002089120.1, XM_002089084.3
    Conserved Domains (1) summary
    COG1405
    Location:22 → 289
    SUA7; Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Nucleotide Protein Strain
Heading Accession and Version

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