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LOC6527937 zinc finger CCCH-type with G patch domain-containing protein [ Drosophila yakuba ]

Gene ID: 6527937, updated on 10-May-2024

Summary

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Gene symbol
LOC6527937
Gene description
zinc finger CCCH-type with G patch domain-containing protein
Locus tag
Dyak_GE18884
See related
EnsemblRapid:LOC6527937
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila yakuba
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GE18884; GE18884-PA
Orthologs
fruit fly all
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Genomic context

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See LOC6527937 in Genome Data Viewer
Location:
chromosome: 2L
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Prin_Dyak_Tai18E2_2.1 (GCF_016746365.2) 2L NC_052527.2 (12773252..12775049)
101 previous assembly Prin_Dyak_Tai18E2_2.0 (GCF_016746365.1) 2L NC_052527.1 (12773253..12775071)

Chromosome 2L - NC_052527.2Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette sub-family G member 4 Neighboring gene uncharacterized LOC26534644 Neighboring gene methyltransferase-like protein 17, mitochondrial Neighboring gene DNA-binding protein RFXANK Neighboring gene uncharacterized LOC6527939

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH-type with G patch domain-containing protein
Names
Dyak\GE18884
Dyak\GE18884-PA
dyak_GLEANR_2668

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila yakuba Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

Genomic

  1. NC_052527.2 Reference Prin_Dyak_Tai18E2_2.1 Primary Assembly

    Range
    12773252..12775049
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002088968.4 → XP_002089004.1  zinc finger CCCH-type with G patch domain-containing protein

    See identical proteins and their annotated locations for XP_002089004.1

    UniProtKB/Swiss-Prot
    B4NYQ2
    Related
    XP_002089004.1, XM_002088968.4
    Conserved Domains (2) summary
    smart00356
    Location:155 → 176
    ZnF_C3H1; zinc finger
    pfam01585
    Location:312 → 355
    G-patch; G-patch domain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B4NYQ2.1 GenPept UniProtKB/Swiss-Prot:B4NYQ2

Gene LinkOut

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Molecular Biology Databases