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Caper RNA-binding protein 39-like protein Caper [ Drosophila ananassae ]

Gene ID: 6497772, updated on 15-May-2024

Summary

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Gene symbol
Caper
Gene description
RNA-binding protein 39-like protein Caper
Locus tag
Dana_GF14957
See related
EnsemblRapid:LOC6497772
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila ananassae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GF14957; GF14957-PA; GF14957-PB; GF14957-PC
Orthologs
fruit fly all
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Genomic context

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See Caper in Genome Data Viewer
Location:
chromosome: 3R
Exon count:
9
Annotation release Status Assembly Chr Location
102 current ASM1763931v2 (GCF_017639315.1) 3R NC_057930.1 (28685416..28690351, complement)
101 previous assembly DanaRS2.1 (GCF_003285975.2) Unplaced Scaffold NW_022473268.1 (10288098..10292717, complement)

Chromosome 3R - NC_057930.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein DDB_G0274915 Neighboring gene trafficking kinesin-binding protein milt Neighboring gene RAS oncogene family member Rab30 Neighboring gene probable basic-leucine zipper transcription factor R Neighboring gene Mitochondrial Magnesium Exporter 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 39
Names
Dana\GF14957
Dana\GF14957-PA
Dana\GF14957-PB
Dana\GF14957-PC
dana_GLEANR_15723

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila ananassae Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1763931v2

Genomic

  1. NC_057930.1 Reference ASM1763931v2

    Range
    28685416..28690351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014906327.3 → XP_014761813.1  RNA-binding protein 39 isoform X1

    UniProtKB/TrEMBL
    B3MKX5
    Related
    XP_014761813.1, XM_014906327.3
    Conserved Domains (5) summary
    cd12283
    Location:238 → 310
    RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    cd12284
    Location:337 → 409
    RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
    cd12285
    Location:483 → 567
    RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    TIGR01622
    Location:76 → 577
    SF-CC1; splicing factor, CC1-like family
    pfam15519
    Location:425 → 500
    RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein

  2. XM_014906328.3 → XP_014761814.1  RNA-binding protein 39 isoform X1

    UniProtKB/TrEMBL
    B3MKX5
    Related
    XP_014761814.1, XM_014906328.3
    Conserved Domains (5) summary
    cd12283
    Location:238 → 310
    RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    cd12284
    Location:337 → 409
    RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
    cd12285
    Location:483 → 567
    RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    TIGR01622
    Location:76 → 577
    SF-CC1; splicing factor, CC1-like family
    pfam15519
    Location:425 → 500
    RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein

  3. XM_044716176.1 → XP_044572111.1  RNA-binding protein 39 isoform X2

    Related
    XP_044572111.1, XM_044716176.1
    Conserved Domains (1) summary
    TIGR01622
    Location:29 → 436
    SF-CC1; splicing factor, CC1-like family

  4. XM_044716174.1 → XP_044572109.1  RNA-binding protein 39 isoform X2

    Related
    XP_044572109.1, XM_044716174.1
    Conserved Domains (1) summary
    TIGR01622
    Location:29 → 436
    SF-CC1; splicing factor, CC1-like family

  5. XM_044716175.1 → XP_044572110.1  RNA-binding protein 39 isoform X2

    Related
    XP_044572110.1, XM_044716175.1
    Conserved Domains (1) summary
    TIGR01622
    Location:29 → 436
    SF-CC1; splicing factor, CC1-like family
Nucleotide Protein Strain
Heading Accession and Version

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