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Gm20472 predicted gene 20472 [ Mus musculus (house mouse) ]

Gene ID: 629133, updated on 8-Feb-2024

Summary

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Official Symbol
Gm20472provided by MGI
Official Full Name
predicted gene 20472provided by MGI
Gene description
predicted pseudogene 6950
Primary source
MGI:MGI:5141937
See related
AllianceGenome:MGI:5141937
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm6950; EG629133
Expression
Broad expression in limb E14.5 (RPKM 1.6), CNS E11.5 (RPKM 1.1) and 20 other tissues See more
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Genomic context

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See Gm20472 in Genome Data Viewer
Location:
12 A1.3; 12 8.37 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (23326086..23365349, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (23276085..23315348, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene hippocalcin-like 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_31739 Neighboring gene predicted gene, 53747 Neighboring gene predicted gene 9285 Neighboring gene predicted gene, 38699 Neighboring gene predicted gene 9286

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • predicted pseudogene 6950

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_169039.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122327

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    23326086..23365349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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