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CMS_1101 transport protein [ Clavibacter michiganensis subsp. sepedonicus ]

Gene ID: 6156995, discontinued on 4-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:

Summary

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Gene symbol
CMS_1101
Gene description
transport protein
Locus tag
CMS_1101
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Clavibacter michiganensis subsp. sepedonicus (strain: ATCC33113, sub-species: sepedonicus)
Lineage
Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Clavibacter
Old locus tag
CMS1101
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Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010407.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Miscellaneous features

  • Loc: c1153299-1153222 PS00217 Sugar transport proteins signature 2.
  • Loc: c1153425-1153375 PS00216 Sugar transport proteins signature 1.
  • Loc: c1153575-1152397 HMMPfam hit to PF07690, Major Facilitator Superfamily inference = protein motif:HMMPfam:PF07690
  • Loc: c1153575-1153507, ~, c1153479-1153411, ~, c1153392-1153324, ~, c1153314-1153246, ~, c1153209-1153141, ~, c1153128-1153060, ~, c1152831-1152763, ~, c1152735-1152667, ~, c1152648-1152589, ~, c1152576-1152508, ~, c1152405-1152337 11 probable transmembrane helices predicted for CMS1101 by TMHMM2.0 at aa 30-52, 62-84, 91-113, 117-139,152-174, 179-201, 278-300, 310-332, 339-358, 363-385 and 420-442
  • Loc: c1153602-1152295 HMMPfam hit to PF00083, General substrate transporter, score 2.9e-48 inference = protein motif:HMMPfam:PF00083

General protein information

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Names
transport protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010407.1 Reference assembly

    Range
    1152289..1153662 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_001709844.1 transport protein [Clavibacter michiganensis subsp. sepedonicus]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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