U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SGCD sarcoglycan delta [ Canis lupus familiaris (dog) ]

Gene ID: 612079, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
SGCDprovided by VGNC
Official Full Name
sarcoglycan deltaprovided by VGNC
Primary source
VGNC:VGNC:46093
See related
Ensembl:ENSCAFG00845002587
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (53696389..54612269, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (53151553..54062671, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (54146275..55057219, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (53521774..54443521, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (53631480..54544178, complement)

Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene hepatitis A virus cellular receptor 1 Neighboring gene T cell immunoglobulin and mucin domain containing 4 Neighboring gene uncharacterized LOC119871642 Neighboring gene uncharacterized LOC111095573

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Exome sequencing reveals independent SGCD deletions causing limb girdle muscular dystrophy in Boston terriers. Cox ML, et al. Skelet Muscle, 2017 Jul 11. PMID 28697784, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051808.1 Reference ROS_Cfam_1.0

    Range
    53696389..54612269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038663535.1 → XP_038519463.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_038663536.1 → XP_038519464.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Related
    ENSCAFP00845003660.1, ENSCAFT00845004582.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_038663534.1 → XP_038519462.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049264.1 Alternate UMICH_Zoey_3.1

    Range
    53521774..54443521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038473842.1 → XP_038329770.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_038473843.1 → XP_038329771.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_038473841.1 → XP_038329769.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

    Range
    53631480..54544178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038599231.1 → XP_038455159.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_038599232.1 → XP_038455160.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_038599230.1 → XP_038455158.1  delta-sarcoglycan

    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

    Range
    54146275..55057219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038534931.1 → XP_038390859.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_038534932.1 → XP_038390860.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_038534930.1 → XP_038390858.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    53151553..54062671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014113050.3 → XP_013968525.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014113051.3 → XP_013968526.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_005619257.4 → XP_005619314.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C0MWE3, A0A8I3N2L6
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 276
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials