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spo11 topoisomerase acting in meiosis [ Laccaria bicolor S238N-H82 ]

Gene ID: 6073174, updated on 28-Dec-2023

Summary

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Gene symbol
spo11
Gene description
topoisomerase acting in meiosis
Locus tag
LACBIDRAFT_145110
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Laccaria bicolor S238N-H82 (strain: S238N-H82)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricineae; Hydnangiaceae; Laccaria
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Genomic context

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See spo11 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
13

NW_001889876.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001889876.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Martin F, et al. Nature, 2008 Mar 6. PMID 18322534

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in meiotic DNA double-strand break formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in meiotic DNA double-strand break processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
topoisomerase acting in meiosis
XP_001877496.1
  • believed to initiate meiotic recombination, topoisomerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001889876.1 Reference assembly

    Range
    1408330..1409906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001877461.1 → XP_001877496.1  topoisomerase acting in meiosis, partial [Laccaria bicolor S238N-H82]

    See identical proteins and their annotated locations for XP_001877496.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B0D1A9
    Conserved Domains (2) summary
    cd00223
    Location:153 → 315
    TOPRIM_TopoIIB_SPO; TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) ...
    pfam04406
    Location:40 → 103
    TP6A_N; Type IIB DNA topoisomerase
Nucleotide Protein
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