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LACBIDRAFT_306135 uncharacterized protein [ Laccaria bicolor S238N-H82 ]

Gene ID: 6070831, updated on 28-Dec-2023

Summary

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Gene symbol
LACBIDRAFT_306135
Gene description
uncharacterized protein
Locus tag
LACBIDRAFT_306135
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Laccaria bicolor S238N-H82 (strain: S238N-H82)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricineae; Hydnangiaceae; Laccaria
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Genomic context

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See LACBIDRAFT_306135 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
20

NW_001889873.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001889873.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Martin F, et al. Nature, 2008 Mar 6. PMID 18322534

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001889873.1 Reference assembly

    Range
    2946561..2951149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001874893.1 → XP_001874928.1  uncharacterized protein LACBIDRAFT_306135 [Laccaria bicolor S238N-H82]

    See identical proteins and their annotated locations for XP_001874928.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B0CSU1
    Conserved Domains (4) summary
    cl02553
    Location:175 → 487
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:175 → 464
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam06337
    Location:899 → 976
    DUSP; DUSP domain
    cl00155
    Location:1062 → 1117
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
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