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LACBIDRAFT_242726 uncharacterized protein [ Laccaria bicolor S238N-H82 ]

Gene ID: 6069596, updated on 28-Dec-2023

Summary

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Gene symbol
LACBIDRAFT_242726
Gene description
uncharacterized protein
Locus tag
LACBIDRAFT_242726
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Laccaria bicolor S238N-H82 (strain: S238N-H82)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricineae; Hydnangiaceae; Laccaria
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Genomic context

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See LACBIDRAFT_242726 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
6

NW_001889872.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001889872.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Martin F, et al. Nature, 2008 Mar 6. PMID 18322534

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001889872.1 Reference assembly

    Range
    2819197..2821004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001874249.1 → XP_001874284.1  uncharacterized protein LACBIDRAFT_242726 [Laccaria bicolor S238N-H82]

    See identical proteins and their annotated locations for XP_001874284.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B0CPA7
    Conserved Domains (4) summary
    COG0513
    Location:1 → 497
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:223 → 347
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:3 → 209
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam13959
    Location:383 → 442
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
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