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barc RRM1_TatSF1_like and RRM2_TatSF1_like domain-containing protein barc [ Culex quinquefasciatus (southern house mosquito) ]

Gene ID: 6046866, updated on 15-May-2024

Summary

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Gene symbol
barc
Gene description
RRM1_TatSF1_like and RRM2_TatSF1_like domain-containing protein barc
See related
VectorBase:CQUJHB001673; EnsemblRapid:LOC6046866
Gene type
protein coding
RefSeq status
MODEL
Organism
Culex quinquefasciatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex
Orthologs
fruit fly all
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Genomic context

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See barc in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
100 current VPISU_Cqui_1.0_pri_paternal (GCF_015732765.1) 3 NC_051863.1 (164712786..164895835)

Chromosome 3 - NC_051863.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119770478 Neighboring gene peroxisomal targeting signal 2 receptor Neighboring gene arrestin homolog Neighboring gene uncharacterized LOC6048154 Neighboring gene uncharacterized LOC6045372 Neighboring gene NPC intracellular cholesterol transporter 2-like Neighboring gene uncharacterized LOC119769324

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051863.1 Chromosome 3 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: HIV Tat-specific factor 1
Names
HIV Tat-specific factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Culex quinquefasciatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Genomic

  1. NC_051863.1 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

    Range
    164712786..164895835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038264842.1 → XP_038120770.1  LOW QUALITY PROTEIN: HIV Tat-specific factor 1

    Related
    XP_038120770.1, XM_038264842.1
    Conserved Domains (2) summary
    cd12281
    Location:307 → 397
    RRM1_TatSF1_like; RNA recognition motif 1 (RRM1) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
    cd12282
    Location:438 → 528
    RRM2_TatSF1_like; RNA recognition motif 2 (RRM2) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Research Materials