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LOC6041388 uncharacterized LOC6041388 [ Culex quinquefasciatus (southern house mosquito) ]

Gene ID: 6041388, updated on 26-Mar-2024

Summary

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Gene symbol
LOC6041388
Gene description
uncharacterized LOC6041388
See related
VectorBase:CQUJHB000283; EnsemblRapid:LOC6041388
Gene type
protein coding
RefSeq status
MODEL
Organism
Culex quinquefasciatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex
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Genomic context

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See LOC6041388 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
100 current VPISU_Cqui_1.0_pri_paternal (GCF_015732765.1) 2 NC_051862.1 (115790454..115796516)

Chromosome 2 - NC_051862.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119768001 Neighboring gene dehydrogenase/reductase SDR family protein 7-like Neighboring gene calnexin Neighboring gene E3 SUMO-protein ligase Su(var)2-10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051862.1 Chromosome 2 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of centriole replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of NF-kappaB transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in aggresome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC6041388
Names
tripartite motif protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Culex quinquefasciatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Genomic

  1. NC_051862.1 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

    Range
    115790454..115796516
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038254710.1 → XP_038110638.1  uncharacterized protein LOC6041388

    Related
    XP_038110638.1, XM_038254710.1
    Conserved Domains (6) summary
    smart00502
    Location:155 → 266
    BBC; B-Box C-terminal domain
    PRK08581
    Location:475 → 706
    PRK08581; amidase domain-containing protein
    cd03773
    Location:293 → 421
    MATH_TRIM37; Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins. ...
    TIGR00927
    Location:613 → 771
    2A1904; K+-dependent Na+/Ca+ exchanger
    cd16619
    Location:32 → 74
    mRING-HC-C4C4_TRIM37_C-VIII; Modified RING finger, HC subclass (C4C4-type), found in tripartite motif-containing protein 37 (TRIM37) and similar proteins
    cd19779
    Location:114 → 151
    Bbox2_TRIM37_C-VIII; B-box-type 2 zinc finger found in tripartite motif-containing protein 37 (TRIM37) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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