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Jarid2 Jumonji, AT rich interactive domain 2 [ Culex quinquefasciatus (southern house mosquito) ]

Gene ID: 6035613, updated on 15-May-2024

Summary

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Gene symbol
Jarid2
Gene description
Jumonji, AT rich interactive domain 2
See related
VectorBase:CQUJHB013755; EnsemblRapid:LOC6035613
Gene type
protein coding
RefSeq status
MODEL
Organism
Culex quinquefasciatus
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex
Orthologs
fruit fly all
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Genomic context

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See Jarid2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
100 current VPISU_Cqui_1.0_pri_paternal (GCF_015732765.1) 3 NC_051863.1 (117232436..117252833, complement)

Chromosome 3 - NC_051863.1Genomic Context describing neighboring genes Neighboring gene B9 domain-containing protein 2 Neighboring gene serine-rich adhesin for platelets Neighboring gene queuine tRNA-ribosyltransferase accessory subunit 2 Neighboring gene ubiquitin carboxy-terminal hydrolase L5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_051863.1 Chromosome 3 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: protein Jumonji
Names
protein Jumonji

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Culex quinquefasciatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

Genomic

  1. NC_051863.1 Reference VPISU_Cqui_1.0_pri_paternal Primary Assembly

    Range
    117232436..117252833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038259122.1 → XP_038115050.1  LOW QUALITY PROTEIN: protein Jumonji

    UniProtKB/TrEMBL
    B0WAM8
    Related
    XP_038115050.1, XM_038259122.1
    Conserved Domains (7) summary
    smart00545
    Location:1492 → 1533
    JmjN; Small domain found in the jumonji family of transcription factors
    PTZ00121
    Location:198 → 881
    PTZ00121; MAEBL; Provisional
    PTZ00449
    Location:1022 → 1290
    PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
    PHA03247
    Location:727 → 1136
    PHA03247; large tegument protein UL36; Provisional
    cd16870
    Location:1556 → 1667
    ARID_JARD2; ARID/BRIGHT DNA binding domain of Jumonji/ARID domain-containing protein 2 (JARID2) and similar proteins
    pfam02928
    Location:2021 → 2085
    zf-C5HC2; C5HC2 zinc finger
    cl40423
    Location:1815 → 1930
    cupin_RmlC-like; RmlC-like cupin superfamily
Nucleotide Protein Strain
Heading Accession and Version

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