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CC1G_07657 DNA mismatch repair protein msh6 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6008882, updated on 17-May-2024

Summary

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Gene symbol
CC1G_07657
Gene description
DNA mismatch repair protein msh6
Primary source
FungiDB:CC1G_07657
Locus tag
CC1G_07657
See related
VEuPathDB:CC1G_07657
Gene type
protein coding
RNA name
DNA mismatch repair protein msh6
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_07657 in Genome Data Viewer
Location:
chromosome: 9, map: unlocalized
Exon count:
29

NW_003307536.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307536.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
DNA mismatch repair protein msh6

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307536.1 Reference assembly

    Range
    1453130..1458450 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001832345.2 → XP_001832397.2  DNA mismatch repair protein msh6 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001832397.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8NC53
    Conserved Domains (7) summary
    COG0249
    Location:346 → 1227
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam01624
    Location:352 → 478
    MutS_I; MutS domain I
    pfam05188
    Location:487 → 642
    MutS_II; MutS domain II
    pfam05192
    Location:668 → 765
    MutS_III; MutS domain III
    cl17173
    Location:1179 → 1263
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
    cl17822
    Location:832 → 916
    MutS_III; MutS domain III
    cl21455
    Location:981 → 1194
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
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