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CC1G_04465 helicase SWR1 [ Coprinopsis cinerea okayama7#130 ]

Gene ID: 6006470, updated on 17-May-2024

Summary

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Gene symbol
CC1G_04465
Gene description
helicase SWR1
Primary source
FungiDB:CC1G_04465
Locus tag
CC1G_04465
See related
VEuPathDB:CC1G_04465
Gene type
protein coding
RNA name
helicase SWR1
RefSeq status
PROVISIONAL
Organism
Coprinopsis cinerea okayama7#130 (strain: okayama7#130)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; Coprinopsis
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Genomic context

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See CC1G_04465 in Genome Data Viewer
Location:
chromosome: 3, map: unlocalized
Exon count:
12

NW_003307542.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent DNA helicase Neighboring gene hypothetical protein Neighboring gene AGC/PKA protein kinase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003307542.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus). Stajich JE, et al. Proc Natl Acad Sci U S A, 2010 Jun 29. PMID 20547848, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Swr1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
helicase SWR1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003307542.1 Reference assembly

    Range
    891639..897146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001829980.2 → XP_001830032.2  helicase SWR1 [Coprinopsis cinerea okayama7#130]

    See identical proteins and their annotated locations for XP_001830032.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A8N587
    Conserved Domains (4) summary
    cd00046
    Location:839 → 979
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:823 → 1112
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1346 → 1466
    Helicase_C; Helicase conserved C-terminal domain
    pfam07529
    Location:443 → 514
    HSA; HSA
Nucleotide Protein
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