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ago1 argonaute 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 593855, updated on 14-Dec-2023

Summary

Gene symbol
ago1
Gene description
argonaute 1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145613.1 (14680701..14711504, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577921.1 (319465..348166)

NW_022145613.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 43 Neighboring gene ribosomal protein L19 Neighboring gene caveolin-2-like Neighboring gene caveolin-1

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130718.1NP_001124190.1  argonaute 1

    See identical proteins and their annotated locations for NP_001124190.1

    Status: PROVISIONAL

    Source sequence(s)
    EU733246
    UniProtKB/TrEMBL
    B3VCG6
    Conserved Domains (5) summary
    PLN03202
    Location:107892
    PLN03202; protein argonaute; Provisional
    cd02846
    Location:308427
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:472899
    Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...
    pfam08699
    Location:257305
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:107246
    ArgoN; N-terminal domain of argonaute

RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145613.1 Reference Spur_5.0 Primary Assembly

    Range
    14680701..14711504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030973675.1XP_030829535.1  argonaute 1 isoform X1

    UniProtKB/TrEMBL
    A0A7M7N1E7
    Conserved Domains (4) summary
    cd02846
    Location:308427
    PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...
    cd04657
    Location:472899
    Piwi_ago-like; PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the ...
    pfam08699
    Location:256305
    ArgoL1; Argonaute linker 1 domain
    pfam16486
    Location:115246
    ArgoN; N-terminal domain of argonaute