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cul1 cullin 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 589630, updated on 14-Dec-2023

Summary

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Symbol
cul1
Full Name
cullin 1
Primary source
EchinoBase:ECB-GENE-23157218
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See cul1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145612.1 (3999661..4021314)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577159.1 (826349..847895, complement)

NW_022145612.1Genomic Context describing neighboring genes Neighboring gene creatine kinase U-type, mitochondrial Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene ubiquitin conjugating enzyme E2 Z Neighboring gene WD repeat domain 60

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cullin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145612.1 Reference Spur_5.0 Primary Assembly

    Range
    3999661..4021314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_789267.5 → XP_794360.1  cullin-1

    UniProtKB/TrEMBL
    A0A7M7RGH3
    Conserved Domains (2) summary
    smart00884
    Location:697 → 764
    Cullin_Nedd8; Cullin protein neddylation domain
    pfam00888
    Location:23 → 665
    Cullin; Cullin family
Nucleotide Protein
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